PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00153.2.p
Common NameEUGRSUZ_K00153
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 207aa    MW: 23140.3 Da    PI: 8.4071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00153.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lv+ +  +G  +W+++++  g++R++k+c++rw +yl
  Eucgr.K00153.2.p 14 KGPWTAEEDRKLVNFILTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                      79********************************************97 PP

2Myb_DNA-binding48.42.1e-1572111647
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + E+ l +d+++ lG++ W++Ia++++ gRt++++k++w+++
  Eucgr.K00153.2.p  72 EAEESLVIDLHATLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                       679**************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-22562IPR009057Homeodomain-like
PROSITE profilePS5129415.024961IPR017930Myb domain
SuperFamilySSF466895.31E-2711108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001671.11E-101661No hitNo description
PROSITE profilePS5129425.47762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2463117IPR009057Homeodomain-like
SMARTSM007175.4E-1466114IPR001005SANT/Myb domain
CDDcd001673.31E-1171112No hitNo description
PfamPF002491.4E-1372111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDRKLVNFIL THGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NEAEESLVID LHATLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIRMG  120
IDPVTHKPLQ EQANEQVPSK ANEQAKFEVS NHETPVYPCD GSSDNFSSPI IDNFSTGALP  180
GNDDMVLFGQ EDGKNEKIFS SACGET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00153.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035019.11e-131PREDICTED: protein ODORANT1
SwissprotQ50EX62e-89ODO1_PETHY; Protein ODORANT1
TrEMBLA0A058ZYZ91e-154A0A058ZYZ9_EUCGR; Uncharacterized protein
STRINGSolyc08g079270.2.16e-88(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-88myb domain protein 42